Papers authored by Klára Barsi under her maiden name (underlined)
Kentepozidou E, Aitken SJ, Feig C, Stefflova K, Ibarra-Soria X, Odom DT, Roller M, Flicek P* (2020). Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains. Genome Biol. 21(1):5.
Thybert D….Stefflova K…. Odom DT*, Flicek P* (2018). Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. Genome Res. 28(4):448-459.
Leigh-Brown S, Goncalves A, Thybert D, Stefflova K, Watt S, Flicek P, Brazma A, Marioni JC, Odom DT* (2015). Regulatory Divergence of Transcript Isoforms in a Mammalian Model System. PLoS One. 10(9):e0137367
Wong ES, Thybert D, Schmitt BM, Stefflova K, Odom DT, Flicek P* (2015). Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals. Genome Res. 25(2):167-78.
Ballester B, Medina-Rivera A, Schmidt D, Gonzàlez-Porta M, Carlucci M, Chen X, Chessman K, Faure AJ, Funnell AP, Goncalves A, Kutter C, Lukk M, Menon S, McLaren WM, Stefflova K, Watt S, Weirauch MT, Crossley M, Marioni JC, Odom DT, Flicek P, Wilson MD* (2014). Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways. Elife. 3:e02626.
Stefflova K, Thybert D, Wilson MD, Streeter I, Aleksic J, Karagianni P, Brazma A, Adams DJ, Talianidis I, Marioni JC, Flicek P, Odom DT* (2013). Cooperativity and rapid evolution of cobound transcription factors in closely related mammals. Cell. 154(3):530-40
Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E. Flicek P, Brazma A, Odom DT*, Marioni JC* (2012). Extensive compensatory cis-trans regulation in the evolution of mouse gene expression. Genome Res. 22(12): 2376-84
Kutter C, Watt S, Stefflova K, Wilson MD, Gonçalves A, Ponting CP, Odom DT, Marques AC* (2012). Rapid turnover of long noncoding RNAs and the evolution of gene expression. PLoS Genetics. 8(7): e1002841
Stefflova K*, Dulik MC, Barnholtz-Sloan J, Pai AA, Walker AH, Rebbeck TR (2011). Dissecting the Within-Africa Ancestry of Populations of African Descent in the Americas. PLoS ONE 6(1): e14496
Chang B… Stefflova K…Rebbeck TR* (2011).Validation of Genome-Wide Prostate Cancer Associations in Men of African Descent. Cancer Epidemiology Biomarkers & Prevention 20(1): 23-32
Mawn TM, Popov AV, Beardsley NJ, Stefflova K, Milkevitch M, Zheng G, Delikatny EJ* (2011). In vivo detection of phospholipase C by enzyme-activated near-infrared probes. Bioconjugate Chemistry 22(12): 2434-43.
Rebbeck TR*, Weber A, Walker AH, Stefflova K, Tran TV, Spangler E, Chang B, Zeigler-Johnson CM (2010). Context-Dependent Effects of Genome-Wide Association Study Genotypes and Neighborhood-Level Factors on Biochemical (PSA) Failure after Prostatectomy. Cancer Epidemiology Biomarkers & Prevention 19(9): 2115-23.
Stefflova K*, Dulik MC, Pai AA, Walker AH, Ziegler-Johnson C, Gueye S, Schurr TG, Rebbeck TR (2009). Evaluation of Group Genetic Ancestry of Populations from Philadelphia and Dakar in the Context of Sex-Biased Admixture in the Americas. PLoS ONE 4(11): e7842.
Eeles R… Stefflova K … Easton DF* (2009). Identification of Seven Novel Prostate Cancer Susceptibility Loci Through a Genome-wide Association Study. Nature Genetics 41(10):1116-21.
Lo PC, Chen J, Stefflova K, Warren M, Navab R, Bandarchi B, Mullins S, Tsao M, Cheng J, Zheng G* (2009). Photodynamic Molecular Beacon Triggered by Fibroblast Activation Protein on Cancer-associated Fibroblasts for Diagnosis and Treatment of Epithelial Cancers. Journal of Medicinal Chemistry 52(2):358-68.
Chen J, Lovell JF, Lo PC, Stefflova K, Niedre M, Wilson BC, Zheng G* (2008). A Tumor mRNA-triggered Photodynamic Molecular Beacon Based on Oligonucleotide Hairpin Control of Singlet Oxygen Production. Photochemical and Photobiological Sciences 7(7):775-81.
Chen J, Jarvi M, Lo PC, Stefflova K, Wilson BC, Zheng G* (2007). Using the Singlet Oxygen Scavenging Property of Carotenoid in Photodynamic Molecular Beacons to Minimize Photodamage to Non-targeted Cells. Photochemical and Photobiological Sciences 6(12):1311-7.
Stefflova K, Chen J, Zheng G* (2007). Killer Beacons for Combined Cancer Imaging and Therapy. Current Medicinal Chemistry 14(20):2110-25.
Zheng G*, Chen J, Stefflova K, Jarvi M, Li H, Wilson BC (2007). Photodynamic Molecular Beacon as an Activatable Photosensitizer Based on Protease Controlled Singlet Oxygen Quenching and Activation. PNAS 104(21):8989-94.
Stefflova K, Chen J, Zheng G* (2007). Using Molecular Beacons for Cancer Imaging and Treatment. Frontiers in Bioscience 12:4709-21.
Stefflova K, Li H, Chen J, Zheng G* (2007). Peptide-based pharmacomodulation of a cancer-specific optical imaging and photodynamic therapy agent. Bioconjugate Chemistry 18(2):379-88.
Stefflova K, Chen J, Li H, Zheng G* (2006). Targeted Photodynamic Therapy Agent with a Built-in Apoptosis Sensor for In Vivo Near-infrared Imaging of Tumor Apoptosis Triggered by its Photosensitization In Situ. Molecular Imaging 5(4):520-32.
Stefflova K, Chen J, Marotta D, Li H, Zheng G* (2006). Photodynamic therapy agent with a built-in apoptosis sensor (PDT-BIAS) for evaluating its own therapeutic outcome in situ. Journal of Medicinal Chemistry 49(13):3850-6.
Chen J, Stefflova K, Niedre M J, Wilson B C, Chance B, Glickson J D, Zheng G* (2004). Protease-Triggered Photosensitizing Beacon Based on Singlet Oxygen Quenching and Activation.Journal of American Chemical Society126(37):11450-11451.